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Papers: 10.1186/s13059-018-1596-9

https://doi.org/10.1186/s13059-018-1596-9

Comparison of computational methods for the identification of topologically associating domains

Cited by: 155
Author(s): Marie Zufferey, Daniele Tavernari, Elisa Oricchio, Giovanni Ciriello
Published: over 6 years ago

Software Mentions 9

bioconductor: HiTC
High Throughput Chromosome Conformation Capture analysis
Papers that mentioned: 21
Very Likely Science (75)
cran: HiCseg
Detection of domains in HiC data
Papers that mentioned: 17
Very Likely Science (75)
cran: spectral
Common Methods of Spectral Data Analysis
Papers that mentioned: 6
Very Likely Science (85)
cran: TopDom
An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
Papers that mentioned: 31
Very Likely Science (85)
pypi: EAST
Text analysis library based on the Annotated Suffix Tree method
Papers that mentioned: 95
Very Likely Science (90)
pypi: HiCExplorer
Set of programs to process, analyze and visualize Hi-C data
Papers that mentioned: 33
Very Likely Science (80)
pypi: linux
Papers that mentioned: 450
Very Likely Science (65)
pypi: matryoshka
To cut small images from a original image in batch, just like the Matryoshka Dolls.
Papers that mentioned: 2
Very Likely Science (65)
pypi: spectral
Spectral Python (SPy) is a Python module for hyperspectral image processing.
Papers that mentioned: 6
Very Likely Science (80)