Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-018-1466-5
https://doi.org/10.1186/s13059-018-1466-5
Differential gene expression analysis tools exhibit substandard performance for long non-coding RNA-sequencing data
Cited by: 40
Author(s): Alemu Takele Assefa, Katrijn De Paepe, Celine Everaert, Pieter Mestdagh, Olivier Thas, Jo Vandesompele
Published: over 6 years ago
Software Mentions 10
bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataPapers that mentioned: 139
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: NOISeq
Exploratory analysis and differential expression for RNA-seq dataPapers that mentioned: 321
cran: ConsRank
Compute the Median Ranking(s) According to the Kemeny's Axiomatic ApproachPapers that mentioned: 2
cran: PoissonSeq
Papers that mentioned: 30cran: QuasiSeq
Analyzing RNA Sequencing Count Tables Using Quasi-LikelihoodPapers that mentioned: 22
pypi: voom
A python message bus that you can put 4 million volts through.Papers that mentioned: 136