Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-018-1419-z
https://doi.org/10.1186/s13059-018-1419-z
Gene-level differential analysis at transcript-level resolution
Cited by: 97
Author(s): Lynn Yi, Harold Pimentel, Nicolas Bray, Lior Pachter
Published: over 6 years ago
Software Mentions 6
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysisPapers that mentioned: 367
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.Papers that mentioned: 307