Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-017-1309-9

https://doi.org/10.1186/s13059-017-1309-9

DESMAN: a new tool for de novo extraction of strains from metagenomes

Cited by: 149
Author(s): Christopher Quince, Tom O. Delmont, Sébastien Raguideau, Johannes Alneberg, Aaron E. Darling, Gavin Collins, A. Murat Eren
Published: over 7 years ago

Software Mentions 5

cran: ART
Aligned Rank Transform for Nonparametric Factorial Analysis
Papers that mentioned: 580
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
pypi: sequenza-utils
Analysis of cancer sequencing samples, utilities for the sequenza R package
Papers that mentioned: 2
pypi: simulator
Electrical Power System Simulator
Papers that mentioned: 90
pypi: vsearch
The Head First Python Search Tools
Papers that mentioned: 284