Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-017-1302-3

https://doi.org/10.1186/s13059-017-1302-3

Cited by: 127
Author(s): Reena Narsai, Quentin Gouil, David Secco, Akanksha Srivastava, Yuliya V. Karpievitch, Lim Chee Liew, Ryan Lister, Mathew G. Lewsey, James Whelan
Published: over 6 years ago

Software Mentions 5

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: cufflinks
Productivity Tools for Plotly + Pandas
Papers that mentioned: 415