Papers: 10.1186/s13059-017-1302-3

https://doi.org/10.1186/s13059-017-1302-3

Extensive transcriptomic and epigenomic remodelling occurs during Arabidopsis thaliana germination

Cited by: 127
Author(s): Reena Narsai, Quentin Gouil, David Secco, Akanksha Srivastava, Yuliya V. Karpievitch, Lim Chee Liew, Ryan Lister, Mathew G. Lewsey, James Whelan
Published: about 9 years ago

Software Mentions 5

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
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Very Likely Science (76)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
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cran: SAM
Sparse Additive Modelling
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pypi: bowtie
Interactive Dashboard Toolkit.
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pypi: cufflinks
Productivity Tools for Plotly + Pandas
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Very Likely Science (100)