Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-017-1284-1

https://doi.org/10.1186/s13059-017-1284-1

SuperTranscripts: a data driven reference for analysis and visualisation of transcriptomes

Cited by: 75
Author(s): N. Davidson, Anthony D. K. Hawkins, Alicia Oshlack
Published: over 7 years ago

Software Mentions 6

bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
bioconductor: Gviz
Plotting data and annotation information along genomic coordinates
Papers that mentioned: 134
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: cufflinks
Productivity Tools for Plotly + Pandas
Papers that mentioned: 415
pypi: linux

Papers that mentioned: 450
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017