Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-017-1281-4

https://doi.org/10.1186/s13059-017-1281-4

Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid

Cited by: 77
Author(s): Weiren Zhu, Bo Hu, Claude Becker, Ezgi Sueheyla Dogan, Kenneth W. Berendzen, Detlef Weigel, Chang Liu
Published: over 7 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
bioconductor: HiTC
High Throughput Chromosome Conformation Capture analysis
Papers that mentioned: 21
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017