Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-017-1184-4

https://doi.org/10.1186/s13059-017-1184-4

IRFinder: assessing the impact of intron retention on mammalian gene expression

Cited by: 184
Author(s): Robert Middleton, Dadi Gao, Aubin Thomas, Babita Singh, Amy Y M Au, Justin Wong, Alexandra Bomane, Bertrand Cosson, Eduardo Eyras, John E.J. Rasko, William Ritchie
Published: over 7 years ago

Software Mentions 3

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759