Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-016-0992-2
https://doi.org/10.1186/s13059-016-0992-2
CHiCAGO: robust detection of DNA looping interactions in Capture Hi-C data
Cited by: 330
Author(s): Jonathan Cairns, Paula Freire-Pritchett, Steven W. Wingett, Csilla Várnai, Andrew Dimond, Vincent Plagnol, Daniel R. Zerbino, Stefan Schoenfelder, Biola M. Javierre, Cameron S. Osborne, Peter Fraser, Mikhail Spivakov
Published: over 8 years ago
Software Mentions 3
bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSetPapers that mentioned: 1,962
bioconductor: Chicago
CHiCAGO: Capture Hi-C Analysis of Genomic OrganizationPapers that mentioned: 13
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583