Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-016-0969-1

https://doi.org/10.1186/s13059-016-0969-1

Taxonomer: an interactive metagenomics analysis portal for universal pathogen detection and host mRNA expression profiling

Cited by: 136
Author(s): Steven Flygare, Keith E. Simmon, Chase Miller, Yi Qiao, Brett Kennedy, Tonya Di Sera, Erin H. Graf, Keith D. Tardif, Aurélie Kapusta, Shawn Rynearson, Chris Stockmann, Krista Queen, Suxiang Tong, Karl V. Voelkerding, Anne J. Blaschke, Carrie L. Byington, Seema Jain, Andrew T. Pavia, Kwabena Krow Ampofo, Karen Eilbeck, Gábor Marth, Mark Yandell, Robert Salais
Published: over 8 years ago

Software Mentions 6

cran: RDP
The Ramer-Douglas-Peucker Algorithm
Papers that mentioned: 1,243
pypi: Binner
Calculate bin sizes for items. Easy!
Papers that mentioned: 4
pypi: Cython
The Cython compiler for writing C extensions in the Python language.
Papers that mentioned: 118
pypi: iobio
Simple tools for analysis
Papers that mentioned: 8
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017