Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s13059-016-0881-8
https://doi.org/10.1186/s13059-016-0881-8
Cited by: 1,691
Author(s): Ana Conesa, Pedro Madrigal, Sonia Tarazona, David Gomez-Cabrero, Alejandra Cervera, Andrew McPherson, Michał Wojciech Szcześniak, Daniel J. Gaffney, Laura L. Elo, Xuegong Zhang, A Mortazavi
Published: over 8 years ago
Software Mentions 21
bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataPapers that mentioned: 139
bioconductor: BitSeq
Papers that mentioned: 28bioconductor: DEGseq
Identify Differentially Expressed Genes from RNA-seq dataPapers that mentioned: 697
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq dataPapers that mentioned: 261
bioconductor: EDASeq
Exploratory Data Analysis and Normalization for RNA-SeqPapers that mentioned: 61
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: GEM
GEM: fast association study for the interplay of Gene, Environment and MethylationPapers that mentioned: 317
bioconductor: maSigPro
Significant Gene Expression Profile Differences in Time Course Gene Expression DataPapers that mentioned: 119
bioconductor: NOISeq
Exploratory analysis and differential expression for RNA-seq dataPapers that mentioned: 321
bioconductor: SeqGSEA
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicingPapers that mentioned: 18
cran: COMBAT
A Combined Association Test for Genes using Summary StatisticsPapers that mentioned: 157