Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-015-0821-z

https://doi.org/10.1186/s13059-015-0821-z

Identification of low abundance microbiome in clinical samples using whole genome sequencing

Cited by: 79
Author(s): Chao Zhang, Kyle Cleveland, Felice Schnoll‐Sussman, Bridget McClure, Michelle Bigg, Prashant V. Thakkar, Nikolaus Schultz, Manish A. Shah, Doron Betel
Published: almost 9 years ago

Software Mentions 1

pypi: MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306