Papers: 10.1186/s13059-015-0702-5
https://doi.org/10.1186/s13059-015-0702-5
Comparative assessment of methods for the computational inference of transcript isoform abundance from RNA-seq data
Cited by: 128
Author(s): Alexander Kanitz, Foivos Gypas, Andreas Gruber, Andreas Gruber, Georges Martín, Mihaela Zavolan
Published: about 10 years ago
Software Mentions 9
bioconductor: baySeq
Empirical Bayesian analysis of patterns of differential expression in count dataPapers that mentioned: 139
Very Likely Science (100)
bioconductor: BitSeq
Papers that mentioned: 28
Unlikely Science (0)
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq dataPapers that mentioned: 261
Very Likely Science (100)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
Very Likely Science (100)
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browserPapers that mentioned: 107
Very Likely Science (90)
cran: rsem
Robust Structural Equation Modeling with Missing Data and Auxiliary VariablesPapers that mentioned: 53
Very Likely Science (93)
Very Likely Science (85)
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing readsPapers that mentioned: 1,562
Very Likely Science (100)
Very Likely Science (90)