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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-015-0605-5

https://doi.org/10.1186/s13059-015-0605-5

5-hydroxymethylcytosine marks promoters in colon that resist DNA hypermethylation in cancer

Cited by: 61
Author(s): Santiago Uribe-Lewis, Rory Stark, Thomas Carroll, Mark J. Dunning, Martin Bachman, Yoko Itō, Lovorka Stojic, Silvia Halim, Sarah L. Vowler, Andy G. Lynch, Benjamin Delatte, Eric James de Bony, Laurence Colin, Matthieu Defrance, Felix Krueger, Ana Luísa Silva, Rogier ten Hoopen, Ashraf E.K. Ibrahim, François Fuks, Adele Murrell
Published: over 10 years ago

Software Mentions 5

bioconductor: beadarray
Quality assessment and low-level analysis for Illumina BeadArray data
Papers that mentioned: 94
Very Likely Science (100)
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
Very Likely Science (100)
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
Very Likely Science (90)