Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13058-020-01379-3

https://doi.org/10.1186/s13058-020-01379-3

Acquired mutations and transcriptional remodeling in long-term estrogen-deprived locoregional breast cancer recurrences

Cited by: 19
Author(s): Nolan Priedigkeit, Kai Ding, William Horne, Jay K. Kolls, Tian Du, Peter C. Lucas, Jens-Uwe Blohmer, Carsten Denkert, A Machleidt, Barbara Ingold-Heppner, Steffi Oesterreich, Adrian V. Lee
Published: almost 4 years ago

Software Mentions 7

bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
bioconductor: VariantAnnotation
Annotation of Genetic Variants
Papers that mentioned: 47
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473
pypi: CNVkit
Copy number variation toolkit for high-throughput sequencing.
Papers that mentioned: 161
pypi: picardtools
python3 interface with Picard Tools from Broad institute
Papers that mentioned: 14