Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12915-020-00874-5

https://doi.org/10.1186/s12915-020-00874-5

Automated identification of the mouse brain’s spatial compartments from in situ sequencing data

Cited by: 16
Author(s): Gabriele Partel, Markus M. Hilscher, Milli Giorgia, Leslie Solorzano, Anna H. Klemm, Mats Nilsson, Carolina Wählby
Published: about 4 years ago

Software Mentions 4

cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: CellProfiler

Papers that mentioned: 1,504
pypi: SpatialDE
Spatial and Temporal DE test
Papers that mentioned: 14
pypi: TissUUmaps
TissUUmaps is a lightweight viewer that uses basic web tools to visualize gene expression data or any kind of point data on top of whole slide images.
Papers that mentioned: 2