Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12889-018-5879-6
https://doi.org/10.1186/s12889-018-5879-6
Gut microbiota, short chain fatty acids, and obesity across the epidemiologic transition: the METS-Microbiome study protocol
Cited by: 27
Author(s): Lara R. Dugas, Louise Lie, Jacob Plange‐Rhule, Kweku Bedu-Addo, Pascal Bovet, Estelle V. Lambert, Terrence Forrester, Amy Luke, Jack A. Gilbert, Brian T. Layden
Published: over 6 years ago
Software Mentions 3
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and PermutationsPapers that mentioned: 6,292
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306