Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12885-021-08559-0

https://doi.org/10.1186/s12885-021-08559-0

A novel ferroptosis-related 12-gene signature predicts clinical prognosis and reveals immune relevancy in clear cell renal cell carcinoma

Cited by: 42
Author(s): Ying‐Kai Hong, Mingen Lin, Dehua Ou, Zhuangkai Huang, Peilin Shen
Published: over 3 years ago

Software Mentions 15

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation
Papers that mentioned: 255
cran: survival
Survival Analysis
Papers that mentioned: 1,690
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473
cran: timeROC
Time-Dependent ROC Curve and AUC for Censored Survival Data
Papers that mentioned: 254
pypi: gene
gene
Papers that mentioned: 185
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: survival
Add static script_dir() method to Path
Papers that mentioned: 1,690