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Papers: 10.1186/s12885-019-5965-x

https://doi.org/10.1186/s12885-019-5965-x

Distinct signatures of lung cancer types: aberrant mucin O-glycosylation and compromised immune response

Cited by: 32
Author(s): Marta Lucchetta, Isabelle da Piedade, Mohamed Mounir, Marina Vabistsevits, Thilde Terkelsen, Elena Papaleo
Published: almost 6 years ago

Software Mentions 11

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: Mfuzz
Soft clustering of time series gene expression data
Papers that mentioned: 160
Very Likely Science (100)
bioconductor: MoonlightR
Identify oncogenes and tumor suppressor genes from omics data
Papers that mentioned: 2
Very Likely Science (100)
bioconductor: ReactomePA
Reactome Pathway Analysis
Papers that mentioned: 171
Very Likely Science (100)
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
Very Likely Science (100)
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
Very Likely Science (100)
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
Very Likely Science (85)
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
Very Likely Science (100)
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
Very Likely Science (85)
pypi: DEA
A simple library for differential expression analysis
Papers that mentioned: 195
Very Likely Science (75)