Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12870-021-03149-5

https://doi.org/10.1186/s12870-021-03149-5

Pathogen and drought stress affect cell wall and phytohormone signaling to shape host responses in a sorghum COMT bmr12 mutant

Cited by: 6
Author(s): Maya Khasin, Lois F. Bernhardson, Patrick M. O’Neill, Nathan A. Palmer, Erin D. Scully, Scott E. Sattler, Deanna L. Funnell‐Harris
Published: over 3 years ago

Software Mentions 4

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307