Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12866-019-1598-0

https://doi.org/10.1186/s12866-019-1598-0

Characterization of Salmonella Dublin isolated from bovine and human hosts

Cited by: 35
Author(s): Narayan Paudyal, Hang Pan, Mohammed Elbediwi, Xiao Hua Zhou, Xianqi Peng, Xiaoliang Li, Weihuan Fang, Min Yue
Published: about 5 years ago

Software Mentions 15

bioconductor: ggtree

an R package for visualization of tree and annotation data
Papers that mentioned: 474

bioconductor: treeio

Base Classes and Functions for Phylogenetic Tree Input and Output
Papers that mentioned: 32

cran: CGE

Computing General Equilibrium
Papers that mentioned: 55

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: gridExtra

Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298

cran: miscTools

Miscellaneous Tools and Utilities
Papers that mentioned: 4

cran: phangorn

Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

cran: phytools

Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586

cran: tidyverse

Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023

cran: xlsx

Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Files
Papers that mentioned: 95

pypi: miscTools

Tools for most projects
Papers that mentioned: 4

pypi: phytools

Useful tools for physicists.
Papers that mentioned: 586

pypi: treeio

A pure python parser for tree data format IO
Papers that mentioned: 32

pypi: xlsx

XLSX Parsing (from js-xlsx)
Papers that mentioned: 95