Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-021-07493-6

https://doi.org/10.1186/s12864-021-07493-6

Chromosome-length genome assembly and structural variations of the primal Basenji dog (Canis lupus familiaris) genome

Cited by: 19
Author(s): Richard Edwards, Matthew A. Field, James M. Ferguson, Olga Dudchenko, Jens Keilwagen, Benjamin D. Rosen, Gary S. Johnson, Edward S. Rice, La Deanna Hillier, Jillian M. Hammond, Samuel G. Towarnicki, Arina D. Omer, Ruqayya Khan, Ksenia Skvortsova, Ozren Bogdanović, Robert A. Zammit, E Aiden, Wesley C. Warren, J. William O. Ballard
Published: over 3 years ago

Software Mentions 10

bioconductor: MethylSeekR
Segmentation of Bis-seq data
Papers that mentioned: 33
cran: BAS
Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling
Papers that mentioned: 55
cran: purge
Purge Training Data from Models
Papers that mentioned: 6
cran: zoo
S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)
Papers that mentioned: 45
pypi: blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
Papers that mentioned: 1,819
pypi: igv
Jupyter extension for embedding the genome visualation igv.js in a notebook
Papers that mentioned: 16
pypi: java
Papers that mentioned: 165
pypi: perl
Perl as a Python package
Papers that mentioned: 604
pypi: purge
Delete temp file as per patthen
Papers that mentioned: 6
pypi: zoo
Zoo is a rpc framework for Python
Papers that mentioned: 45