Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-019-6432-4

https://doi.org/10.1186/s12864-019-6432-4

Pan-tissue transcriptome analysis of long noncoding RNAs in the American beaver Castor canadensis

Cited by: 2
Author(s): Amita Kashyap, Adelaide Rhodes, Brent Kronmiller, Josie Berger, Ashley Champagne, Edward W. Davis, Mitchell V. Finnegan, Matthew Geniza, David A. Hendrix, Christiane V. Löhr, Vanessa M. Petro, Thomas J. Sharpton, Jackson Wells, Clinton W. Epps, Pankaj Jaiswal, Brett M. Tyler, Stephen A. Ramsey
Published: almost 5 years ago

Software Mentions 5

cran: CPAT
Change Point Analysis Tests
Papers that mentioned: 299
cran: LncPath
Identifying the Pathways Regulated by LncRNA Sets of Interest
Papers that mentioned: 6
pypi: CPAT
CPAT (Coding Potential Assessment Tool)
Papers that mentioned: 299
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: ViennaRNA
A library for the prediction and comparison of RNA secondary structures.
Papers that mentioned: 200