Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-018-4943-z

https://doi.org/10.1186/s12864-018-4943-z

ATAC2GRN: optimized ATAC-seq and DNase1-seq pipelines for rapid and accurate genome regulatory network inference

Cited by: 19
Author(s): Thomas Pranzatelli, Drew G. Michael, John A. Chiorini
Published: over 6 years ago

Software Mentions 5

pypi: bash
Bash for Python
Papers that mentioned: 65
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: pyDNase
DNase-seq analysis library
Papers that mentioned: 12
pypi: RGT
Toolkit to perform regulatory genomics data analysis
Papers that mentioned: 11
pypi: seqtk
seqtk provides various tools for Sequence.
Papers that mentioned: 213