Papers: 10.1186/s12864-017-3746-y
https://doi.org/10.1186/s12864-017-3746-y
GUIDEseq: a bioconductor package to analyze GUIDE-Seq datasets for CRISPR-Cas nucleases
Cited by: 29
Author(s): Lihua Julie Zhu, Michael C. Lawrence, Ankit Gupta, Hervé Pagès, Alper Küçükural, Manuel Garber, Scot A. Wolfe
Published: about 8 years ago
Software Mentions 8
bioconductor: BSgenome
Software infrastructure for efficient representation of full genomes and their SNPsPapers that mentioned: 47
Very Likely Science (90)
bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome rangesPapers that mentioned: 145
Very Likely Science (76)
bioconductor: CRISPRseek
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systemsPapers that mentioned: 18
Very Likely Science (83)
Very Likely Science (90)
Very Likely Science (100)
Very Likely Science (78)
Very Likely Science (83)
pypi: guideseq
An easy to use bioinformatic pipeline for the GUIDE-seq assay.Papers that mentioned: 3
Very Likely Science (100)