Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-016-2745-8

https://doi.org/10.1186/s12864-016-2745-8

An optimized protocol for generation and analysis of Ion Proton sequencing reads for RNA-Seq

Cited by: 17
Author(s): Yongxian Yuan, Huaiqian Xu, Rufina Leung
Published: over 8 years ago

Software Mentions 5

bioconductor: BitSeq
Papers that mentioned: 28
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017