Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-015-1303-0

https://doi.org/10.1186/s12864-015-1303-0

Genome-wide comparison of PU.1 and Spi-B binding sites in a mouse B lymphoma cell line

Cited by: 34
Author(s): Lauren A. Solomon, Stephen K. H. Li, Jan Piskorz, Li Xu, Rodney P. DeKoter
Published: over 9 years ago

Software Mentions 6

bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
cran: BED
Biological Entity Dictionary (BED)
Papers that mentioned: 49
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: galaxy
Galaxy (http://galaxyproject.org/).
Papers that mentioned: 32
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: profiler
Simple tool to make profiling easy.
Papers that mentioned: 88