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Papers: 10.1186/s12859-020-3433-x

https://doi.org/10.1186/s12859-020-3433-x

RASflow: an RNA-Seq analysis workflow with Snakemake

Cited by: 30
Author(s): Xiaokang Zhang, Inge Jonassen
Published: over 5 years ago

Software Mentions 7

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
Very Likely Science (83)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: DEA
A simple library for differential expression analysis
Papers that mentioned: 195
Very Likely Science (75)
pypi: pc
process control -- easy fork-exec and pipe with I/O redirection
Papers that mentioned: 23
Very Likely Science (65)