Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-020-03922-7

https://doi.org/10.1186/s12859-020-03922-7

annoFuse: an R Package to annotate, prioritize, and interactively explore putative oncogenic RNA fusions

Cited by: 3
Author(s): Krutika S. Gaonkar, Fédérico Marini, Komal S. Rathi, Payal Jain, Yuankun Zhu, Nicholas A. Chimicles, Miguel Brown, Ammar S. Naqvi, Bo Zhang, Phillip B. Storm, John M. Maris, Pichai Raman, Adam Resnick, Konstantin Strauch, Jaclyn N. Taroni, Jo Lynne Rokita
Published: about 4 years ago

Software Mentions 13

cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: ggthemes
Extra Themes, Scales and Geoms for 'ggplot2'
Papers that mentioned: 69
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
cran: qdapRegex
Regular Expression Removal, Extraction, and Replacement Tools
Papers that mentioned: 2
cran: readr
Read Rectangular Text Data
Papers that mentioned: 80
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: tibble
Simple Data Frames
Papers that mentioned: 47
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
pypi: chimera
Simple Image Generation
Papers that mentioned: 42
pypi: grid
Volumetric data module
Papers that mentioned: 137