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Papers: 10.1186/s12859-020-03860-4

https://doi.org/10.1186/s12859-020-03860-4

Finding a suitable library size to call variants in RNA-Seq

Cited by: 3
Author(s): Anna Quaglieri, Christoffer Flensburg, Terence P. Speed, Ian J. Majewski
Published: over 4 years ago

Software Mentions 15

bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
Very Likely Science (100)
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
Very Likely Science (83)
cran: doParallel
Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90
Very Likely Science (75)
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
Very Likely Science (100)
cran: foreach
Provides Foreach Looping Construct
Papers that mentioned: 50
Very Likely Science (77)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: optparse
Command Line Option Parser
Papers that mentioned: 15
Very Likely Science (100)
cran: seqinr
Biological Sequences Retrieval and Analysis
Papers that mentioned: 110
Very Likely Science (85)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
Very Likely Science (100)
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
Very Likely Science (100)
pypi: normalize
Declarative Python meta-model system and visitor utilities
Papers that mentioned: 7
Very Likely Science (65)
pypi: seqtk
seqtk provides various tools for Sequence.
Papers that mentioned: 213
Very Likely Science (65)