Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-020-03860-4

https://doi.org/10.1186/s12859-020-03860-4

Finding a suitable library size to call variants in RNA-Seq

Cited by: 3
Author(s): Anna Quaglieri, Christoffer Flensburg, Terence P. Speed, Ian J. Majewski
Published: about 4 years ago

Software Mentions 15

bioconductor: GenomicRanges

Representation and manipulation of genomic intervals
Papers that mentioned: 323

bioconductor: Rsubread

Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331

cran: cowplot

Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298

cran: doParallel

Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90

cran: dplyr

A Grammar of Data Manipulation
Papers that mentioned: 1,213

cran: foreach

Provides Foreach Looping Construct
Papers that mentioned: 50

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: optparse

Command Line Option Parser
Papers that mentioned: 15

cran: seqinr

Biological Sequences Retrieval and Analysis
Papers that mentioned: 110

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

cran: stringr

Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172

cran: tidyr

Tidy Messy Data
Papers that mentioned: 321

pypi: normalize

Declarative Python meta-model system and visitor utilities
Papers that mentioned: 7

pypi: seqtk

seqtk provides various tools for Sequence.
Papers that mentioned: 213