Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-018-2367-z

https://doi.org/10.1186/s12859-018-2367-z

Biotite: a unifying open source computational biology framework in Python

Cited by: 54
Author(s): Patrick Kunzmann, Kay Hamacher
Published: about 6 years ago

Software Mentions 12

pypi: biopython
Freely available tools for computational molecular biology.
Papers that mentioned: 114
pypi: Cython
The Cython compiler for writing C extensions in the Python language.
Papers that mentioned: 118
pypi: freesasa
Calculate solvent accessible surface areas of proteins
Papers that mentioned: 4
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: MDAnalysis
An object-oriented toolkit to analyze molecular dynamics trajectories.
Papers that mentioned: 182
pypi: mdtraj
MDTraj: A modern, open library for the analysis of molecular dynamics trajectories
Papers that mentioned: 8
pypi: mmtf-python
A decoding libary for the PDB mmtf format
Papers that mentioned: 1
pypi: msgpack
MessagePack serializer
Papers that mentioned: 3
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: pytest-cov
Pytest plugin for measuring coverage.
Papers that mentioned: 2
pypi: requests
Python HTTP for Humans.
Papers that mentioned: 7
pypi: scikit-bio
Data structures, algorithms and educational resources for bioinformatics.
Papers that mentioned: 41