Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/gb-2012-13-8-r77

https://doi.org/10.1186/gb-2012-13-8-r77

ggbio: an R package for extending the grammar of graphics for genomic data

Cited by: 265
Author(s): Tao Yin, Dianne Cook, Michael C. Lawrence
Published: almost 13 years ago

Software Mentions 11

bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: ggbio
Visualization tools for genomic data
Papers that mentioned: 53
bioconductor: Gviz
Plotting data and annotation information along genomic coordinates
Papers that mentioned: 134
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
pypi: autoplot
Interface to Autoplot Java library
Papers that mentioned: 4
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: qplot
Visualization of SciGRID_gas networks structures
Papers that mentioned: 6