Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/2049-2618-1-25

https://doi.org/10.1186/2049-2618-1-25

An in vitrobiofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome

Cited by: 103
Author(s): Anna Edlund, Youngik Yang, Adam P. Hall, Lihong Guo, Renate Lux, Xuesong He, Karen E. Nelson, Kenneth H. Nealson, Shibu Yooseph, Wenyuan Shi, Jeffrey S. McLean
Published: about 11 years ago

Software Mentions 2

pypi: MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306

pypi: workbench

A scalable framework for security research and development teams.
Papers that mentioned: 139