Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2229-13-213

https://doi.org/10.1186/1471-2229-13-213

Ups and downs of a transcriptional landscape shape iron deficiency associated chlorosis of the maize inbreds B73 and Mo17

Cited by: 12
Author(s): Claude Urbany, Andreas Benke, Johanna Marsian, Bruno Huettel, Richard Reinhardt, Benjamin Stich
Published: almost 11 years ago

Software Mentions 7

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: easyRNASeq
Count summarization and normalization for RNA-Seq data
Papers that mentioned: 17
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
pypi: cufflinks
Productivity Tools for Plotly + Pandas
Papers that mentioned: 415
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017