Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2164-14-S5-S9

https://doi.org/10.1186/1471-2164-14-S5-S9

Detection and classification of peaks in 5' cap RNA sequencing data

Cited by: 4
Author(s): Dario Strbenac, Nicola J. Armstrong, Jean Yee Hwa Yang
Published: about 11 years ago

Software Mentions 8

bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
Papers that mentioned: 47
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
cran: LiblineaR
Linear Predictive Models Based on the LIBLINEAR C/C++ Library
Papers that mentioned: 15
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233