Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/1471-2164-14-892
https://doi.org/10.1186/1471-2164-14-892
RNA-Seq optimization with eQTL gold standards
Cited by: 24
Author(s): Shannon Ellis, Saloni Gupta, Foram N. Ashar, Joel S. Bader, Andrew B. West, Dan E. Arking
Published: almost 11 years ago
Software Mentions 9
bioconductor: EDASeq
Exploratory Data Analysis and Normalization for RNA-SeqPapers that mentioned: 61
cran: MatrixEQTL
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix OperationsPapers that mentioned: 81
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing readsPapers that mentioned: 1,562
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assaysPapers that mentioned: 3,071