Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2164-12-227

https://doi.org/10.1186/1471-2164-12-227

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

Cited by: 144
Author(s): Susanne U. Franssen, Ranjit Shrestha, Andrea Bräutigam, Erich Bornberg‐Bauer, Andreas Weber
Published: over 13 years ago

Software Mentions 7

bioconductor: MIRA

Methylation-Based Inference of Regulatory Activity
Papers that mentioned: 856

bioconductor: topGO

Enrichment Analysis for Gene Ontology
Papers that mentioned: 652

cran: crossmatch

The Cross-match Test
Papers that mentioned: 8

cran: fasta

Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848

cran: SAM

Sparse Additive Modelling
Papers that mentioned: 4,566

pypi: fasta

The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848

pypi: velvet

Beautiful signal processing and communications algorithms in Python
Papers that mentioned: 156