Data

Tools

Indexes

Applications

Experiments

Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/1471-2105-16-S9-S2

https://doi.org/10.1186/1471-2105-16-S9-S2

Alternative splicing detection workflow needs a careful combination of sample prep and bioinformatics analysis

Cited by: 17
Author(s): Matteo Carrara, Josephine Lum, Francesca Cordero, Marco Beccuti, Michael Poidinger, Susanna Donatelli, Raffaele Calogero, Francesca Zolezzi
Published: about 10 years ago

Software Mentions 7

bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
Very Likely Science (100)
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq data
Papers that mentioned: 261
Very Likely Science (100)
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
Very Likely Science (90)
pypi: total
Simple AWK tasks, made awesome
Papers that mentioned: 2
Very Likely Science (65)
pypi: tss
Threshold Secret Sharing (Shamir's secret sharing scheme).
Papers that mentioned: 1
Likely Science (40)