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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/1471-2105-14-254

https://doi.org/10.1186/1471-2105-14-254

A flexible count data model to fit the wide diversity of expression profiles arising from extensively replicated RNA-seq experiments

Cited by: 49
Author(s): Mikel Esnaola, Pedro Puig, David Herrera González, Robert Castelo, Juan R. González
Published: almost 12 years ago

Software Mentions 9

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
Very Likely Science (100)
bioconductor: cqn
Conditional quantile normalization
Papers that mentioned: 14
Very Likely Science (90)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: oligo
Preprocessing tools for oligonucleotide arrays
Papers that mentioned: 204
Very Likely Science (90)
bioconductor: qvalue
Q-value estimation for false discovery rate control
Papers that mentioned: 248
Very Likely Science (100)
bioconductor: tweeDEseq
RNA-seq data analysis using the Poisson-Tweedie family of distributions
Papers that mentioned: 3
Very Likely Science (100)
cran: GRAPE
Gene-Ranking Analysis of Pathway Expression
Papers that mentioned: 24
Very Likely Science (93)
pypi: oligo
UNOFFICIAL Python client for i-DE
Papers that mentioned: 204
Very Likely Science (65)