Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2105-12-452

https://doi.org/10.1186/1471-2105-12-452

eXframe: reusable framework for storage, analysis and visualization of genomics experiments

Cited by: 5
Author(s): Amit Sinha, Emily Merrill, Scott A. Armstrong, Tim W. Clark, Sudeshna Das
Published: almost 13 years ago

Software Mentions 7

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
cran: SPARQL
SPARQL client
Papers that mentioned: 660
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: cufflinks
Productivity Tools for Plotly + Pandas
Papers that mentioned: 415
pypi: ISA
ISA (Independent Statistics Aggregator) collects node statistics for a cluster of nodes.
Papers that mentioned: 137
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: scripts
Various shell scripts
Papers that mentioned: 315