Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00552-21

https://doi.org/10.1128/mSystems.00552-21

Two-Target Quantitative PCR To Predict Library Composition for Shallow Shotgun Sequencing

Cited by: 3
Author(s): Matthew Y Cho, Marc Oliva, Anna Spreafico, Bin Chen, Wei Xu, Yoojin Choi, Rupert Kaul, Lillian L. Siu, Bryan Coburn, Pierre H. H. Schneeberger
Published: about 3 years ago

Software Mentions 2

pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
pypi: seqtk
seqtk provides various tools for Sequence.
Papers that mentioned: 213