Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00250-20

https://doi.org/10.1128/mSystems.00250-20

Genome-Scale Transcription-Translation Mapping Reveals Features of Zymomonas mobilis Transcription Units and Promoters

Cited by: 16
Author(s): Jessica M. Vera, Indro Neil Ghosh, Yaoping Zhang, Alex S. Hebert, Joshua J. Coon, Robert Landick
Published: about 4 years ago

Software Mentions 4

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: multiscan
R package for combining multiple scans
Papers that mentioned: 6
pypi: fastx
Just a simple kseq.h binding
Papers that mentioned: 197
pypi: pyGenomeTracks
Command-line tool to make beautiful and reproducible genome browser snapshots
Papers that mentioned: 20