Papers: 10.1128/mSystems.00236-18

https://doi.org/10.1128/mSystems.00236-18

Using Core Genome Alignments To Assign Bacterial Species

Cited by: 51
Author(s): Matthew Chung, James B. Munro, Hervé Tettelin, Julie C. Dunning Hotopp
Published: almost 8 years ago

Software Mentions 4

cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
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cran: phangorn
Phylogenetic Reconstruction and Analysis
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pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
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pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
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