Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mSystems.00236-18

https://doi.org/10.1128/mSystems.00236-18

Using Core Genome Alignments To Assign Bacterial Species

Cited by: 51
Author(s): Matthew Chung, James B. Munro, Hervé Tettelin, Julie C. Dunning Hotopp
Published: about 6 years ago

Software Mentions 4

cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
cran: phangorn
Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
pypi: PhyloPhlAn
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
Papers that mentioned: 144