Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mBio.02275-17

https://doi.org/10.1128/mBio.02275-17

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus <i>Puccinia striiformis</i> f. sp. <i>tritici</i> Reveals High Interhaplotype Diversity

Cited by: 99
Author(s): Benjamin Schwessinger, Jana Sperschneider, William S. Cuddy, Diana Garnica, Marisa E. Miller, Jennifer Taylor, Peter N. Dodds, Melania Figueroa, Robert Park, John P. Rathjen
Published: almost 7 years ago

Software Mentions 13

bioconductor: muscle
Multiple Sequence Alignment with MUSCLE
Papers that mentioned: 166
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
pypi: eggnog-mapper
Fast functional annotation of novel sequences using eggNOG orthology assignments.
Papers that mentioned: 41
pypi: funannotate
funannotate: eukaryotic genome annotation pipeline
Papers that mentioned: 32
pypi: jupyter
Jupyter metapackage. Install all the Jupyter components in one go.
Papers that mentioned: 39
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: muscle
Strength Training Program Generator
Papers that mentioned: 166
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
pypi: pybedtools
Wrapper around BEDTools for bioinformatics work
Papers that mentioned: 48
pypi: seaborn
Statistical data visualization
Papers that mentioned: 283
pypi: vcfstats
Powerful statistics for VCF files
Papers that mentioned: 4