Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/AEM.01225-21

https://doi.org/10.1128/AEM.01225-21

Dynamics of the Human Nasal Microbiota and Staphylococcus aureus CC398 Carriage in Pig Truck Drivers across One Workweek

Cited by: 7
Author(s): Anna Cäcilia Ingham, Tinna Ravnholt Urth, Raphael N. Sieber, Marc Stegger, Sofie Marie Edslev, Øystein Angen, Anders Rhod Larsen
Published: about 3 years ago

Software Mentions 13

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
bioconductor: microbiomeMarker
microbiome biomarker analysis toolkit
Papers that mentioned: 4
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: diagram
Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams
Papers that mentioned: 20
cran: factoextra
Extract and Visualize the Results of Multivariate Data Analyses
Papers that mentioned: 650
cran: ggalluvial
Alluvial Plots in 'ggplot2'
Papers that mentioned: 57
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: lmerTest
Tests in Linear Mixed Effects Models
Papers that mentioned: 1,865
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: diagram
Text mode diagrams using UTF-8 characters and fancy colors
Papers that mentioned: 20