Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1111/pbi.13205

https://doi.org/10.1111/pbi.13205

Cited by: 45
Author(s): Linkai Huang, Guangyan Feng, Haidong Yan, Zhongren Zhang, B. Shaun Bushman, Jianping Wang, Aureliano Bombarely, Mingzhou Li, Zhongfu Yang, Gang Nie, Wengang Xie, Lei Xu, Peilin Chen, Xinxin Zhao, Wenkai Jiang, Xinquan Zhang
Published: almost 5 years ago

Software Mentions 7

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: topGO
Enrichment Analysis for Gene Ontology
Papers that mentioned: 652
cran: set
Set Operation
Papers that mentioned: 5
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017