Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1099/mgen.0.000552

https://doi.org/10.1099/mgen.0.000552

Direct identification and molecular characterization of zoonotic hazards in raw milk by metagenomics using Brucella as a model pathogen

Cited by: 6
Author(s): Josephine Grützke, Mayada Gwida, Carlus Deneke, Holger Brendebach, Michaela Projahn, Alexander Schattschneider, Dirk Hofreuter, Maged El-Ashker, Burkhard Malorny, Sascha Al Dahouk
Published: over 3 years ago

Software Mentions 10

cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: plotly
Create Interactive Web Graphics via 'plotly.js'
Papers that mentioned: 163
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: chewBBACA
A complete suite for gene-by-gene schema creation and strain identification.
Papers that mentioned: 22
pypi: grapetree
Web interface of GrapeTree, which is a program for phylogenetic analysis.
Papers that mentioned: 3
pypi: plotly
An open-source, interactive data visualization library for Python
Papers that mentioned: 163
pypi: quast
Genome assembly evaluation tool
Papers that mentioned: 39
pypi: seqtk
seqtk provides various tools for Sequence.
Papers that mentioned: 213
pypi: sigma
Numerical methods in Python
Papers that mentioned: 10