Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1099/mgen.0.000225

https://doi.org/10.1099/mgen.0.000225

Cited by: 20
Author(s): Cameron J. Reid, Matthew Z. DeMaere, Steven P. Djordjevic
Published: about 5 years ago

Software Mentions 14

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: ariba
ARIBA: Antibiotic Resistance Identification By Assembly
Papers that mentioned: 15
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
pypi: grid
Volumetric data module
Papers that mentioned: 137
pypi: mass
Merge and Simplify Scripts: an automated tool for managing, combining and minifying javascript assets for web projects.
Papers that mentioned: 30
pypi: snippy
Snippy is a software development and maintenance notes manager.
Papers that mentioned: 77
pypi: utils
A grab-bag of utility functions and objects
Papers that mentioned: 35