Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1099/mgen.0.000064

https://doi.org/10.1099/mgen.0.000064

In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages

Cited by: 95
Author(s): Danielle J. Ingle, Mary Valcanis, Alex Kuzevski, Marija Tauschek, Michael Inouye, Timothy P. Stinear, Myron M. Levine, Roy M. Robins-Browne, Kathryn E. Holt
Published: over 8 years ago

Software Mentions 6

cran: act
Aligned Corpus Toolkit
Papers that mentioned: 6
cran: kmer
Fast K-Mer Counting and Clustering for Biological Sequence Analysis
Papers that mentioned: 240
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: act

Papers that mentioned: 6
pypi: blast
a simple web-based, multi-platform music/mp3 player written in python, HTML/CSS and javascript
Papers that mentioned: 1,819