Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1097/j.pain.0000000000001416

https://doi.org/10.1097/j.pain.0000000000001416

Comprehensive analysis of long noncoding RNA expression in dorsal root ganglion reveals cell-type specificity and dysregulation after nerve injury

Cited by: 41
Author(s): Georgios Baskozos, J. D. K. Dawes, Jean-Sébastien Austin, Ana Antunes-Martins, Lucy A. McDermott, Alex Clark, Teodora Trendafilova, Jon Lees, Stephen B. McMahon, Jeffrey S. Mogil, Christine Orengo, David L.H. Bennett
Published: about 6 years ago

Software Mentions 7

bioconductor: BiocParallel
Bioconductor facilities for parallel evaluation
Papers that mentioned: 30
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: CPAT
Change Point Analysis Tests
Papers that mentioned: 299
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: CPAT
CPAT (Coding Potential Assessment Tool)
Papers that mentioned: 299
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071